A number of anti-Israel social media accounts, including the Hamas-affiliated Quds News Network, have posted the below accusation:

I have not seen the story mentioned anywhere except for these social media accounts, so I doubt it is true.
Back in 2016, the Muslim prayer room at the same college was vandalized. I am not sure who the culprits were, but the report did contain photos:


Note the floor looks nothing like the floor in the photo being disseminated now. So either there is a new Muslim prayer room there, they renovated it after 2016, or those alleging the recent desecration are lying.
While I try to confirm this, one thing is for sure. The haters have publicized that Hadassah Academic College in Jerusalem has a Muslim prayer room! In fact, about 20% of the college student population are Christian or Muslim Arabs.
How nice of these Israel-haters to remind us just how ridiculous their “apartheid” accusations are.